JJMC uses:

• Mathematica ( and Eclipse / wolfram-workbench – almost solely for the “format” feature on plain text .m / .wl files )
• ampGraphTools amplitudes graph library currently for Mathematica. Example usage here
• TeXShop TeX
• HomeBrew Turning on the *nix.
• iterm2 , zsh, oh-my-zsh current plugins: (git github brew osx screen golang perl python vi-mode rand-quote history)
• GitHub Desktop
• Atom (for editing markdown and jupyter interface, vim for everything else ¯\_(ツ)_/¯ )
• slack
• Dropbox
• 1Password
• anaconda (although I really wouldn’t say this is an endorsement!)
• Evernote
• DjView (to immediately convert djvu to something else when I need to, then delete the djvu file which somehow messes with the finder)
• Keynote for presentations and LaTeXiT for integrating better TeX’d expressions
• Cuba monte-carlo integration library.

Generically handy mac dev environment tips from web-app folk:

• http://www.stuartellis.name/articles/mac-setup/
• http://blog.rangle.io/the-sweet-mac-setup/
• http://mac-dev-env.patrickbougie.com/
• https://coderwall.com/p/cbacta/how-to-setup-your-mac-to-build-single-page-applications-with-angularjs-and-neo4j
• http://glennnaessens.com/setting-up-mac-os-x-for-web-development-part-1/